PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022874.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YC
Protein Properties Length: 221aa    MW: 24506.2 Da    PI: 4.2218
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022874.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC63.54.1e-2032130398
       NF-YC   3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                   fw k    ie++++++nh+lPl+ + ki++ ++   m+s+++P +l+k  e+++ el +r+ + a + +r+t+  sdi +a+++ + + fl d+ p 
  Do022874.1  32 DEFWRKTledIENTANLNNHALPLTSVAKIIRDNQGSLMMSSDTPPFLTKLLEILVQELIVRASMFAISHDRSTILESDIYEAINSRESYVFLSDVLPM 130
                 67999876679999*********************************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001252.1E-642115IPR007125Histone H2A/H2B/H3
SuperFamilySSF471132.64E-1543132IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-1353129IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MANGSKEGPE HPHELNGSPA TPLPSPQQQE IDEFWRKTLE DIENTANLNN HALPLTSVAK  60
IIRDNQGSLM MSSDTPPFLT KLLEILVQEL IVRASMFAIS HDRSTILESD IYEAINSRES  120
YVFLSDVLPM YGTNPDQTSM SNNVPQLQQV HMGSQFLATT STLIENGPTD PLYKLGEQSF  180
QFPKDTLVST TNTQPDPLEL KNDEDLNNES TTSSGSIDKT K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450581.11e-65hypothetical protein SORBIDRAFT_05g007280
TrEMBLK3ZJT52e-95K3ZJT5_SETIT; Uncharacterized protein
STRINGSi026839m4e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17894510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-16nuclear factor Y, subunit C2